nanographics

PUBLICATIONS

2023

Alharbi, Ruwayda; Strnad, Ondřej; Luidolt, Laura R.; Waldner, Manuela; Kouřil, David; Bohak, Ciril; Klein, Tobias; Gröller, Eduard; Viola, Ivan

Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments Journal Article

In: IEEE Transactions on Visualization and Computer Graphics, vol. 29, no. 3, pp. 1860-1875, 2023.

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Kouřil, David; Strnad, Ondřej; Mindek, Peter; Halladjian, Sarkis; Isenberg, Tobias; Gröller, M. Eduard; Viola, Ivan

Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization Journal Article

In: IEEE Transactions on Visualization and Computer Graphics, vol. 29, no. 3, pp. 1733-1747, 2023.

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Eschner, Johannes; Mindek, Peter; Waldner, Manuela

Illustrative Motion Smoothing for Attention Guidance in Dynamic Visualizations Miscellaneous

2023.

BibTeX

Eschner, Johannes; Mindek, Peter; Waldner, Manuela

Illustrative Motion Smoothing for Attention Guidance in Dynamic Visualizations Miscellaneous

2023.

BibTeX

2022

Alharbi, Ruwayda; Strnad, Ondřej; Klein, Tobias; Viola, Ivan

Nanomatrix: Scalable Construction of Crowded Biological Environments Miscellaneous

2022.

BibTeX

Nguyễn, Ngân; Bohak, Ciril; Engel, Dominik; Mindek, Peter; Strnad, Ondrej; Wonka, Peter; Li, Sai; Ropinski, Timo; Viola, Ivan

Finding Nano-Ötzi: Cryo-Electron Tomography Visualization Guided by Learned Segmentation Journal Article

In: IEEE Transactions on Visualization and Computer Graphics, vol. PP, pp. 1-18, 2022.

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2021

Nguyen, Ngan; Strnad, Ondřej; Klein, Tobias; Luo, Deng; Alharbi, Ruwayda; Wonka, Peter; Maritan, Martina; Mindek, Peter; Autin, Ludovic; Goodsell, David S.; Viola, Ivan

Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models Journal Article

In: IEEE Transactions on Visualization and Computer Graphics, vol. 27, no. 2, pp. 722-732, 2021.

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Wu, Hsiang-Yun; Amirkhanov, Aleksandr; Grossmann, Nicolas; Klein, Tobias; Kouřil, David; Miao, Haichao; Luidolt, Laura R.; Mindek, Peter; Raidou, Renata G.; Viola, Ivan; Waldner, Manuela; Gröller, M. Eduard

Visualization Working Group at TU Wien: Visibile Facimus Quod Ceteri Non Possunt Journal Article

In: Visual Informatics, vol. 5, no. 1, pp. 76-84, 2021, ISSN: 2468-502X.

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2020

Klein, Tobias; Viola, Ivan; Gröller, Eduard; Mindek, Peter

Multi-Scale Procedural Animations of Microtubule Dynamics Based on Measured Data Journal Article

In: IEEE Transactions on Visualization and Computer Graphics, vol. 26, no. 1, pp. 622-632, 2020.

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2019

Miao, Haichao; Klein, Tobias; Kouřil, David; Mindek, Peter; Schatz, Karsten; Gröller, M. Eduard; Kozlíková, Barbora; Isenberg, Tobias; Viola, Ivan

Multiscale Molecular Visualization Journal Article

In: Journal of Molecular Biology, vol. 431, no. 6, pp. 1049-1070, 2019, ISSN: 0022-2836.

Abstract | Links | BibTeX

Klein, T.; Mindek, P.; Autin, L.; Goodsell, D. S.; Olson, A. J.; Gröller, E. M.; Viola, I.

Parallel Generation and Visualization of Bacterial Genome Structures Journal Article

In: Computer Graphics Forum, vol. 38, no. 7, pp. 57-68, 2019.

Abstract | Links | BibTeX

Klein, Tobias; Viola, Ivan; Mindek, Peter

A Multi-Scale Animation Framework for Biological Fibrous Structures Proceedings Article

In: Pereira, João Madeiras; Raidou, Renata Georgia (Ed.): EuroVis 2019 - Posters, The Eurographics Association, 2019, ISBN: 978-3-03868-088-8.

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2018

Klein, Tobias; Autin, Ludovic; Kozlíková, Barbora; Goodsell, David S.; Olson, Arthur; Gröller, M. Eduard; Viola, Ivan

Instant Construction and Visualization of Crowded Biological Environments Journal Article

In: IEEE Transactions on Visualization and Computer Graphics, vol. 24, no. 1, pp. 862-872, 2018.

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Koch, Thomas Bernhard; Kouril, David; Klein, Tobias; Mindek, Peter; Viola, Ivan

Semantic Screen-Space Occlusion for Multiscale Molecular Visualization Proceedings Article

In: Puig, Anna Puig; Schultz, Thomas; Vilanova, Anna; Hotz, Ingrid; Kozlikova, Barbora; Vázquez, Pere-Pau (Ed.): Eurographics Workshop on Visual Computing for Biology and Medicine, The Eurographics Association, 2018, ISSN: 2070-5786.

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Mindek, Peter; Kouřil, David; Sorger, Johannes; Toloudis, Daniel; Lyons, Blair; Johnson, Graham; Gröller, M. Eduard; Viola, Ivan

Visualization Multi-Pipeline for Communicating Biology Journal Article

In: IEEE Transactions on Visualization and Computer Graphics, vol. 24, no. 1, pp. 883-892, 2018.

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2017

Sorger, Johannes; Mindek, Peter; Rautek, Peter; Gröller, Eduard; Johnson, Graham; Viola, Ivan

Metamorphers: Storytelling Templates for Illustrative Animated Transitions in Molecular Visualization Proceedings Article

In: Proceedings of the 33rd Spring Conference on Computer Graphics, Association for Computing Machinery, Mikulov, Czech Republic, 2017, ISBN: 9781450351072.

Abstract | Links | BibTeX

2016

Sorger, Johannes; Mindek, Peter; Klein, Tobias; Johnson, Graham; Viola, Ivan

Illustrative Transitions in Molecular Visualization via Forward and Inverse Abstraction Transform Proceedings Article

In: Bruckner, Stefan; Preim, Bernhard; Vilanova, Anna; Hauser, Helwig; Hennemuth, Anja; Lundervold, Arvid (Ed.): Eurographics Workshop on Visual Computing for Biology and Medicine, The Eurographics Association, 2016, ISSN: 2070-5786.

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Muzic, M. Le; Mindek, P.; Sorger, J.; Autin, L.; Goodsell, D. S.; Viola, I.

Visibility Equalizer Cutaway Visualization of Mesoscopic Biological Models Journal Article

In: Computer Graphics Forum, vol. 35, no. 3, pp. 161-170, 2016.

Abstract | Links | BibTeX

During our collaboration with biologists from the SCRIPPS institute, we were fascinated by the intricate beauty of Microtubules - the scaffolding of our cells. These long, hollow tubes, found in every cell of our bodies, fulfill a variety of tasks. They act not only as a structural support, but also as highways for transporting material and signals throughout the cell. One of their fascinating features is that they constantly break down and rebuild as needed. We have produced an animation showing this phenomenon in molecular detail and in realistic speed.

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In a research project together with KAUST, Scripps Research, and TU Wien, we have created the most accurate model of a SARS-CoV-2 virion with atomic resolution. Such a model can help researchers in their effort to understand how the virus works, so that they can find ways to fight it.

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We have developed the fastest molecular renderer in the world. It is able to display billions of atoms interactively with high visual quality. We use this renderer to show how various parts of human cells work on molecular level. In one of our latest projects, the software has been deployed to a dome theatre to creative immersive environment where the audience can dive deep into a human cell and observe the complex beauty of the molecular machinery that keeps us alive.

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